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Epigenetic Profiling of PTPN11 Mutant JMML Hematopoietic Stem and Progenitor Cells Reveals an Aberrant Histone Landscape
Roshani Sinha
Mai Dvorak
Ananthakrishnan Ganesan
Larry Kalesinskas
Charlotte Niemeyer
Christian Flotho
Kathleen M Sakamoto
Norman Lacayo
Rachana Vinay Patil
Rhonda Perriman
Alma-Martina Cepika
Yunying Lucy Liu
Alex Kuo
Paul J. Utz
Purvesh Khatri
Alice Bertaina
出版
Universität
, 2023
URL
http://books.google.com.hk/books?id=Mjpr0AEACAAJ&hl=&source=gbs_api
註釋
Abstract: Juvenile myelomonocytic leukemia (JMML) is a deadly pediatric leukemia driven by RAS pathway mutations, of which >35% are gain-of-function in PTPN11. Although DNA hypermethylation portends severe clinical phenotypes, the landscape of histone modifications and chromatin profiles in JMML patient cells have not been explored. Using global mass cytometry, Epigenetic Time of Flight (EpiTOF), we analyzed hematopoietic stem and progenitor cells (HSPCs) from five JMML patients with PTPN11 mutations. These data revealed statistically significant changes in histone methylation, phosphorylation, and acetylation marks that were unique to JMML HSPCs when compared with healthy controls. Consistent with these data, assay for transposase-accessible chromatin with sequencing (ATAC-seq) analysis revealed significant alterations in chromatin profiles at loci encoding post-translational modification enzymes, strongly suggesting their mis-regulated expression. Collectively, this study reveals histone modification pathways as an additional epigenetic abnormality in JMML patient HSPCs, thereby uncovering a new family of potential druggable targets for the treatment of JMML