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Transfer RNA Fragments Replace MicroRNA Regulators of the Cholinergic Post-stroke Immune Blockade
Katarzyna Winek
Sebastian Lobentanzer
Bettina Nadorp
Serafima Dubnov
Claudia Dames
Sandra Jagdmann
Gilli Moshitzky
Benjamin Hotter
Christian Meisel
David S. Greenberg
Sagiv Shifman
Jochen Klein
Shani Shenhar-Tsarfaty
Andreas Meisel
Hermona Soreq
出版
National Academy of Sciences
, 2020
URL
http://books.google.com.hk/books?id=fNsw0AEACAAJ&hl=&source=gbs_api
註釋
Stroke is a leading cause of death and disability. Recovery depends on balance between inflammatory response and immune suppression, which can be CNS-protective but may worsen prognosis by increasing patients' susceptibility to infections. Peripheral cholinergic blockade of immune reactions fine-tunes this immune response, but its molecular regulators are unknown. Therefore, we sought small RNA balancers of the cholinergic anti-inflammatory pathway in peripheral blood from ischemic stroke patients. Using RNA-sequencing and RT-qPCR, we discovered in patients' blood on day 2 after stroke a “change of guards” reflected in massive decreases in microRNAs (miRs) and increases in transfer RNA fragments (tRFs) targeting cholinergic transcripts. Electrophoresis-based size-selection followed by RT-qPCR validated the top 6 upregulated tRFs in a separate cohort of stroke patients, and independent small RNA-sequencing datasets presented post-stroke enriched tRFs as originating from lymphocytes and monocytes. In these immune compartments, we found CD14+ monocytes to express the highest amounts of cholinergic transcripts. In-depth analysis of CD14+ regulatory circuits revealed minimally overlapping subsets of transcription factors carrying complementary motifs to miRs or tRFs, indicating different roles for the stroke-perturbed members of these small RNA species. Furthermore, LPS-stimulated murine RAW264.7 cells presented dexamethasone-suppressible upregulation of the top 6 tRFs identified in human patients, indicating an evolutionarily conserved and pharmaceutically treatable tRF response to inflammatory cues. Our findings identify tRF/miR subgroups which may co-modulate the homeostatic response to stroke in patients' blood and open novel venues for establishing RNA-targeted concepts for post-stroke diagnosis and therapeutics.